VMD-L Mailing List

From: Linchen Gong (gonglch_at_gmail.com)
Date: Fri Jul 24 2009 - 05:44:41 CDT

Dear All,

Could anyone please tell me whether "atomselect" takes into accout of
the periodic boundary condition, if the cell size has been specified
with "molinfo" command.

I want to label the water molecules within 3.3A distance to the
protein, and find that one side of the protein is pretty close to the
cell boundary. That is why I have this question.

Thanks in advance

Mark