VMD-L Mailing List

From: Katherine Parra (kparra_at_mail.usf.edu)
Date: Fri Apr 03 2009 - 10:35:54 CDT

Dear vmd community:
I'm using psfgen to generate a psf file of a protein with three ligands.
These ligands are: acetate ion, formic acid and glycerol.
The topology file I'm using is the top_all27_prot_lipid.inp
The problem I'm having is that I don't know and I don't find the right names
for these ligands in the top file.
My question is should I use another top file?

Thanks in advance.

KParra