From: Ramya Gamini (ramyabhargavi_at_gmail.com)
Date: Fri Mar 06 2009 - 02:06:17 CST

hi!
> have a look into this tutorial. There are scripts meant for
> aligning/orienting the protein and other relevant scripts (eg: removing
> unwanted waters in the membrane etc)
> http://www.ks.uiuc.edu/Training/Tutorials/#memtut
> best
> ramya
>
> On Fri, Mar 6, 2009 at 12:46 AM, Goutham <gouthambs_at_gmail.com> wrote:
>
>> Hey All,
>> I want to put a membrane protein into a membrane bi-layer. I know a way to
>> create the bi-layer. I am looking for any scripts that can be used to align
>> the protein in the membrane automatically. Does any one have any scripts for
>> doing this? I know of scripts that can be used to align manually. I am
>> wondering if it is possible to do them automatically.
>>
>> Thanks
>> Goutham
>>
>
>