From: Nikolay Simakov (
Date: Fri Feb 27 2009 - 16:01:30 CST


I have next problem. Then I load pdb file which has protein and lipids,
vmd create bonds between protein and lipids and do not create bonds
withing lipids. If I split protein and lipids into separate pdb files
and then load them separately everything is fine.

I am running vmd-1.8.6 under linux. I also try to downgrade and check is
it working or not and found that 1.7.1 is doing good.

Has anyone have similar problems?