Harmonic restrains

From: Zhang Yan (yanzhang_at_moon.ibp.ac.cn)
Date: Sat Nov 09 2019 - 02:20:49 CST

Hi,
How can I run namd with harmonic restraints? I saw from the manual that harmonic restrains needs the PDB file containing constraint reference positions, but how can I get this PDB file with constraint reference positions?
Many thanks!
Yan

> 在 2019年11月7日,上午11:24,Zhang Yan <yanzhang_at_moon.ibp.ac.cn> 写道:
>
> Hi all,
> I’m trying to do flexible fitting the crystallography structure to a cryo-electron microscopy density map. I get some errors which I attached in the attachment. I’m not sure which parameter is needed to be changed to avoid these errors. Any suggestions or help are appreciated.
> Best!
> 张艳
> Yan Zhang,
> Associate Professor,
> Institute of Biophysics,
> Chinese Academy of Sciences
>
>
> <屏幕快照 2019-11-07 上午10.10.09.png>
>

张艳
Yan Zhang,
Associate Professor,
Institute of Biophysics,
Chinese Academy of Sciences

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