SMD for understanding the proximity of two atoms

From: Roshan Shrestha (roshanpra_at_gmail.com)
Date: Wed Aug 21 2019 - 10:47:01 CDT

Hello Everyone,
                       Is Steered Molecular Dynamics (SMD) a proper method
to understand how two atoms/residues are coming closer and how much force
is being applied for bringing them closer? I want to calculate the distance
of their proximity as well as the force being applied to them.

With best regards

-- 
*Roshan Shrestha*
M.Sc (Physics)
Central Department of Physics, Tribhuvan University
Kathmandu, Nepal

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