Re: Acceptable Timescale fro NAMD

From: Bassam Haddad (bhaddad_at_pdx.edu)
Date: Wed Jul 24 2019 - 13:20:48 CDT

It largely depends on the question you are asking. What are the timescales
that the phenomenon occurs? How do you plan on monitoring convergence to
equilibrium? I have published work with a total of 1.4 us of simulation,
however, no single system had more than 300 or 400 ns.

Bassam

On Wed, Jul 24, 2019 at 10:39 AM Oscar Bastidas <obastida_at_umn.edu> wrote:

> Hello,
>
> Would someone please tell me what is an acceptable time window (i.e.
> single femtoseconds to 100s of nanoseconds) that the community accepts for
> using NAMD to conduct simulations? If you have a reference, all the
> better. Thanks.
>
> Oscar
>
> Oscar Bastidas, Ph.D.
> Postdoctoral Research Associate
> University of Minnesota
>

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