Re: reg: quenching NAMD trajectory

From: Pratik Narain Srivastava (pratik.narain_at_gmail.com)
Date: Thu Jun 06 2019 - 14:44:39 CDT

If by quenching you mean decrease the number of frames then just load the
trajectory using the stride function. After loading your PDB and PSF files,
when you select you DCD, apply a stride value of total_frames/2000 in the
appropriate field to get 2000 frames loaded.

On Fri, 7 Jun, 2019, 1:11 AM Lara rajam, <lara.4884_at_gmail.com> wrote:

> Dear Namd Users
> I would like to quench the MD generated dcd files ( minimizing to 2000
> steps).
> Can any one let me know the possibilities of doing this
> thanks in advance
>

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