Re: run MD simulation in NAMD using stages file strategy or all in one file ?

From: L- (lamyaoo_at_gmail.com)
Date: Sat Jan 26 2019 - 10:59:20 CST

any answer

On Thu, Dec 13, 2018 at 11:13 AM L- <lamyaoo_at_gmail.com> wrote:

> if i want to run MD simulation in NAMD in 1 or 2 or 100 ns.
> What is the difference between run your simulation in steps"satges" in
> different conf files ( minimization file then Heat, Equilibration and
> production stages)
> or
> all step in one file "see attached file "
> this is my conf file i tray to flow the sample conf file at web, dose this
> file ruining MD ?
> is this will affect the data analysis ,if yes and what exactly.
>
> thank you
>

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