Positive energy for protein

From: Ashkan Shekaari (shekaari_at_email.kntu.ac.ir)
Date: Mon Dec 03 2018 - 08:20:58 CST

Dear Experts,

When I extract energy values for my protein using NAMDEnergy in VMD, I get positive values at all time steps.
Is it a valid result? The atomic structure of the protein does not collapse at all during the simulation.

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Regards, 
Ashkan Shekaari, 
Ph.D Candidate in Solid State Physics, 
K. N. Toosi University of Technology, 
Tehran, Iran 
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