From: Michail Lazaratos (michalislaz_at_zedat.fu-berlin.de)
Date: Thu Aug 30 2018 - 05:41:11 CDT
Dear NAMD users,
i observed weird water behavior when PBC wrapping my system
(protein,membrane & water).
I have attached 2 sample mpg files. Hope it is not too long.
The command i used is:
pbc wrap -centersel "protein" -center com -compound residue -all
Do you have any suggestions? Is my wrapping command wrong to begin with?
Thank you in advance,
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