Re: Three bonds with water in vmd from NAMD DCD

From: Natalia Ostrowska (n.ostrowska_at_cent.uw.edu.pl)
Date: Wed Aug 22 2018 - 04:27:42 CDT

Fix your topology file

2018-08-21 16:17 GMT+02:00 Seibold, Steve Allan <stevesei_at_ku.edu>:

> Hello,
>
> I know this has been addressed and that the psf file contains the extra
> bonds between hydrogens in water, but I don't know how to remove the bond
> from the psf file...I also saw an email where a "script" was mentioned to
> remove these bonds but I could not find that script on-line..Could someone
> send me that script? I would greatly appreciate it...
>
>
> Thanks, Steve
>

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