Re: Three bonds with water in vmd from NAMD DCD

From: Giacomo Fiorin (giacomo.fiorin_at_gmail.com)
Date: Tue Aug 21 2018 - 10:04:42 CDT

It's possible that the solution suggested here is useful to you:
http://www.ks.uiuc.edu/Research/vmd/allversions/vmd_faq.html

On Tue, Aug 21, 2018 at 10:19 AM Seibold, Steve Allan <stevesei_at_ku.edu>
wrote:

> Hello,
>
> I know this has been addressed and that the psf file contains the extra
> bonds between hydrogens in water, but I don't know how to remove the bond
> from the psf file...I also saw an email where a "script" was mentioned to
> remove these bonds but I could not find that script on-line..Could someone
> send me that script? I would greatly appreciate it...
>
>
> Thanks, Steve
>

-- 
Giacomo Fiorin
Associate Professor of Research, Temple University, Philadelphia, PA
Contractor, National Institutes of Health, Bethesda, MD
http://goo.gl/Q3TBQU
https://github.com/giacomofiorin

This archive was generated by hypermail 2.1.6 : Thu Dec 05 2019 - 23:20:07 CST