From: jeevan gc (gcjeevanbdr_at_gmail.com)
Date: Tue Jul 17 2018 - 18:43:50 CDT
Thank you. I could solved the issue using your suggestions.
On Tue, Jul 17, 2018 at 2:54 PM JC Gumbart <gumbart_at_physics.gatech.edu>
> There appear to be parameters in the same file that you found the PSUL
> patch - toppar_all36_prot_heme.str.
> > On Jul 17, 2018, at 5:39 PM, jeevan gc <gcjeevanbdr_at_gmail.com> wrote:
> > Dear all,
> > I am trying to setup CYP450 MD simulation system. I applied a patch PSUL
> to define a coordination between amino acid residues CYS and FE atoms of
> HEME. The created psf and pdb files of the system has a bond between
> CYS:S-FE: HEME as visualized in VMD.
> > Could you please refer a published articles or any references that
> includes CHARMM36 bond angle dihedrals parameter for this coordination?
> > Thank you.
> > Jeevan
-- *Jeevan B. GC, Ph.D* *Post Doctoral Research Associate* *Department of Pharmaceutical Sciences* *Washington State University* *Spokane, WA 99224 , **USA*
This archive was generated by hypermail 2.1.6 : Sun Sep 15 2019 - 23:19:51 CDT