Re: re-centering the molecule while restarting the run

From: Dawid das (addiw7_at_googlemail.com)
Date: Fri Apr 13 2018 - 15:18:06 CDT

Hi,

I'm not sure whether I understand correctly but I guess either editconf or
trjconv is what you need.

Best wishes,
Dawid

2018-04-13 20:27 GMT+02:00 Dhiraj Srivastava <dhirajks_at_gmail.com>:

> Hi all
> is it possible to recentre the molecule while restarting the
> simulation? I am doing my MD simulation in NPT ensemble and molecule is
> moving significantly. before starting my steered MD simulation, I want to
> re-centre the molecule in the water box. is it possible?
>
> Thanks
> Dhiraj
>

This archive was generated by hypermail 2.1.6 : Sat Dec 14 2019 - 23:19:44 CST