Re: How to set up a window distance of 2 angstroms in Umbrella sampling

From: Lutimba Stuart (lutimba.stuart_at_scilifelab.se)
Date: Mon Mar 05 2018 - 03:40:10 CST

Dear NAMD user
Am running umbrella sampling after obtaining a reaction coordinate from
Targeted molecular dynamics that applied a harmonic force on the sugar
driving it to its active site. I would like to run umbrella sampling with a
window distance of 2 angstroms but am not sure of how to set this. AM
following the Umbrella sampling tutorial but it does not describe this. I
am very great full for your help please. Thank you very much.
http://www.ks.uiuc.edu/Training/Tutorials/science/channel/channel-tut.pdf

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