Re: UNABLE TO FIND ANGLE PARAMETERS FOR CD OH1 CD (ATOMS 282 284 282)

From: Vermaas, Joshua (Joshua.Vermaas_at_nrel.gov)
Date: Tue Jan 16 2018 - 13:54:29 CST

Hi Ahmad,
What procedure did you use to apply the patch? I think you may have done
something funny, since the N-terminus is usually the first residue in
your peptide sequence, not the last. The script you used would help
diagnose the problem, since it just looks like the patch was misapplied.
-Josh

On 01/16/2018 10:17 AM, Ahmad Kiani wrote:
> Dear NAMD users,
>
> I am protonated N-terminous part of the LYS which is the last residue
> in my peptide sequence. I got this error while running and I'm
> wondering if you got the same error before then you can help me.
> UNABLE TO FIND ANGLE PARAMETERS FOR CD OH1 CD (ATOMS 282 284 282)
>
> Thank you
> Ahmad

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