From: Fidan Sumbul (fidansumbul_at_gmail.com)
Date: Fri Nov 03 2017 - 06:27:42 CDT
I think you are wondering why the RMSD is changing while you are keeping the backbone of you protein during the minimization. But I don’t see any minimization step in your configuration file. You just used “run” without any minimization.
Fidan Sumbul, PhD
Parc Scientifique et Technologique de Luminy
Bâtiment Inserm TPR2 bloc 5
163 avenue de Luminy
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