From: Richard Overstreet (roverst_at_g.clemson.edu)
Date: Mon Oct 10 2016 - 11:48:28 CDT
I usually use an ssh x11 tunnel to our cluster with nodes that have
120gb. You can also create a script that will omit explicit solvent and
write out a pdb file of just your protein.
On 10/10/2016 10:41 AM, Dhiraj Srivastava wrote:
> I have dcd file with 100000 frames which even after stripping off
> all the water is more than 30 gb in size. Its difficult to load this
> much of data in VMD. My question is, how everyone normally look at
> these data? should I use catdcd to get rid of most of the frames and
> lets say save every 100th frame or so?
This archive was generated by hypermail 2.1.6 : Sun Dec 31 2017 - 23:20:45 CST