From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Mon Mar 21 2016 - 02:45:31 CDT
Similar question have been asked in the past. Maybe search the mailing list archive. Away from that, the NAMD folks do offer benchmark systems of various size for download, which are a good point to start.
BTW. as I pointed out in earlier posts, I highly doubt that anybody without MD experience can carry out reliable benchmarks.
Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von Éric Germaneau
Gesendet: Samstag, 19. März 2016 02:32
Betreff: namd-l: Testing NAMD scalability
I'm not a NAMD user but I nned to test its scalability on our facility.
Can someone tell me how to generate different size of the same system?
Can I take any of those case studies <https://www-s.ks.uiuc.edu/Training/CaseStudies/> and scale them?
-- Éric Germaneau (艾海克), Specialist Center for High Performance Computing Shanghai Jiao Tong University Room 205 Network Center, 800 Dongchuan Road, Shanghai 200240 China Email:germaneau_at_sjtu.edu.cn <mailto:Email:germaneau_at_sjtu.edu.cn> Mobi:+86-136-4161-6480 http://hpc.sjtu.edu.cn
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