From: Norman Geist (norman.geist_at_uni-greifswald.de)
Date: Mon Aug 17 2015 - 04:32:19 CDT
No, you don’t want to use a single node version on a infiniband connected cluster, cause you will not be able to use multiple nodes for one simulation for speedup.
Von: owner-namd-l_at_ks.uiuc.edu [mailto:owner-namd-l_at_ks.uiuc.edu] Im Auftrag von Pragya Priyadarshini
Gesendet: Montag, 17. August 2015 09:45
Betreff: namd-l: Regarding NAMD installation
Dear NAMD user,
I want to install on
Intel xeon based multi core multi node linux cluster. Each node is connected via infiband where OpenFabrics OFED is not installed.
Will Linux86_64-multicore copy provide best results in terms of speed up and accuracy? I am confused because copy mentioned that this is for 64-bit Intel/AMD single node. Please suggest if this will work for above mentioned system configuration.
Thanks and Best Regards
-- Pragya Priyadarshini Junior Research Fellow C/o Dr. Balvinder Singh Bioinformatics Center (G N R P C) Institute of Microbial Technology-CSIR Sector 39A, Chandigarh-160036, INDIA
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