Enerygy Minimization of a homology modelled structure in NAMD
Can someone please let me know if I can energy minimize a homology modelled structure in NAMD? I mean to ask if it's possible in NAMD to relax the sidechains so there are minimum sidechain clashes after the minimization. I have one model and three mutated models.
Again, after docking a ligand, can the same be done and find the best binding affinity (in terms of binding energy)?
P.S.: I'm really novice.
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: Thu Dec 31 2015 - 23:21:46 CST