From: Liqun Zhang (lxz79_at_case.edu)
Date: Fri Nov 14 2014 - 17:19:37 CST
I have run a simulation for a protein in lipid system for a very long time.
In order to remove the pbc effect, I unwrapped the trajectory for protein
and the lipids using pbc commands in vmd program, which made part of the
protein broken in the z-direction. But when I tried to use join command to
join the broken part to the major part of the protein, the major part of
the protein instead was shifted to the broken part. I am not sure how to
solve the problem. Can I get some suggestion here? Thank you very much.
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