Re: velocity manipulation

From: Ajasja Ljubetič (ajasja.ljubetic_at_gmail.com)
Date: Thu Oct 16 2014 - 08:24:34 CDT

Dear Mostafa,

You can manipulate velocities in NAMD during the simulation using TCL forces
<http://www.ks.uiuc.edu/Training/Tutorials/science/forces/forces-tutorial-html/node2.html>.
(Probably the best option).
You can get binary files using *binaryoutput yes. *Also take a look at
*velDCDfile
option. *More info here
<http://www.ks.uiuc.edu/Research/namd/2.9/ug/node12.html#SECTION00062200000000000000>

This archive was generated by hypermail 2.1.6 : Wed Dec 31 2014 - 23:22:56 CST