how to quantify and visualize the flow of water into a protein

From: Thomas Evangelidis (tevang3_at_gmail.com)
Date: Tue Jul 08 2014 - 18:20:48 CDT

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Greetings,

Is anyone aware of any tool that helps visualize and/or quantify the flow
of water into a transporter from an MD trajectory? I have a long trajectory
of a transporter and want to find the main entrance points of water. I can
see by manual inspection the various entrance points but it is difficult to
decide which is/are the most important.

thanks,
Thomas

-- 
======================================================================
Thomas Evangelidis
PhD student
University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
Panepistimioupoli-Zografou
157 71 Athens
GREECE
email: tevang_at_pharm.uoa.gr
          tevang3_at_gmail.com
website: https://sites.google.com/site/thomasevangelidishomepage/

Next message: Maxim Belkin: "Re: how to quantify and visualize the flow of water into a protein"
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Reply: Maxim Belkin: "Re: how to quantify and visualize the flow of water into a protein"
Reply: Joshua Adelman: "Re: how to quantify and visualize the flow of water into a protein"
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