From: Kevin C Chan (cchan2242-c_at_my.cityu.edu.hk)
Date: Tue Jul 08 2014 - 02:30:25 CDT
Dear Sir,
Question is about the internal coordinate IC statements in the topology
files. Referring to paragraphs in NAMD Tutorials - Appendix C TOPOLOGY
FILES, where
"Improper IC statements are indicated by a * preceding the third atom, the
atom to which the other three are bonded, as in 1 2 *3 4."
However, there are several lines in the IC section when there is
no asterisk (*), so which would be the third atom for the angles and
dihedrals?
Thanks for your time.
Kevin
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