problem in finding atom types for ligand

From: Mamon Hatmal (hatmal_at_usc.edu)
Date: Tue Aug 27 2013 - 06:54:38 CDT

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Hi Everyone,

I'm a new user of the NAMD, I'm trying to simulate a protein with ligand. I have a problem in finding the atom types and parameters of the ligand which are compatible with NAMD. I used swissparam and CGEN FF, but in both programs the produced atom types are not compatible with NAMD.

Thanks in advance,

Ma'mon

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