From: Dennis Lam (Dennis.Lam_at_cix.csi.cuny.edu)
Date: Tue Jun 25 2013 - 11:20:15 CDT
Hello,
I have this problem when I run a job in NAMD using SMD.
ERROR: Error on renaming file smd_4_2.restart.coor to smd_4_2.restart.coor.old: Invalid cross-device link
FATAL ERROR: Unable to open binary file smd_4_2.restart.coor: File exists
[0] Stack Traceback:
[0:0] CmiAbort+0x95 [0xbb9dc5]
[0:1] _Z8NAMD_errPKc+0x9d [0x582a99]
[0:2] _ZN6Output17write_binary_fileEPciP6Vector+0x19a [0x9b601a]
[0:3] _ZN6Output26output_restart_coordinatesEP6Vectorii+0x1a1 [0x9b5e61]
[0:4] _ZN6Output10coordinateEiiP6VectorP11FloatVectorR7Lattice+0x164 [0x9b5adc]
[0:5] _ZN24CkIndex_CollectionMaster39_call_receivePositions_CollectVectorMsgEPvP16CollectionMaster+0x135 [0x59359f]
[0:6] CkDeliverMessageFree+0x21 [0xaee919]
[0:7] _Z15_processHandlerPvP11CkCoreState+0x7ba [0xaed92a]
[0:8] CsdScheduleForever+0xb6 [0xbc1196]
[0:9] CsdScheduler+0x1c [0xbc0d74]
[0:10] _ZN7BackEnd7suspendEv+0xb [0x58b0a3]
[0:11] _ZN9ScriptTcl7Tcl_runEPvP10Tcl_InterpiPPc+0x19a [0xa2ad68]
[0:12] TclInvokeStringCommand+0x88 [0xbf8a68]
[0:13] [0xbfb580]
[0:14] [0xbfc966]
[0:15] Tcl_EvalEx+0x16 [0xbfd146]
[0:16] Tcl_FSEvalFileEx+0x151 [0xc5ef51]
[0:17] Tcl_EvalFile+0x2e [0xc5f10e]
[0:18] _ZN9ScriptTcl4loadEPc+0x10 [0xa29f2a]
[0:19] _Z18after_backend_initiPPc+0x407 [0x586917]
[0:20] main+0x3a [0x5864da]
[0:21] __libc_start_main+0xfd [0x2aaaaba1ccdd]
[0:22] _ZNSt8ios_base4InitD1Ev+0x72 [0x54119a]
Any suggestions?
Thanks,
Dennis
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