Re: modeling missing loops in starting structures

From: Thomas Evangelidis (tevang3_at_gmail.com)
Date: Tue May 21 2013 - 17:12:44 CDT

Try this one:

http://falc-loop.seoklab.org/

But don't expect to get any reliable loop structure by any method if your
linker is >15 aa long.

~Thomas

On 22 May 2013 01:08, Martin, Erik W <Erik.Martin_at_stjude.org> wrote:

>
> Hi, I was recently asked to simulate a protein that has two domains
> connected by a flexible linker. This linker is, naturally, missing in the
> crystal structure. I was wondering if anyone has a very easy way to put
> these residues back in? I mean, it doesn't really matter where they start,
> I just need to get them in there.
>
> Thanks,
> Erik
>
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-- 
======================================================================
Thomas Evangelidis
PhD student
University of Athens
Faculty of Pharmacy
Department of Pharmaceutical Chemistry
Panepistimioupoli-Zografou
157 71 Athens
GREECE
email: tevang_at_pharm.uoa.gr
          tevang3_at_gmail.com
website: https://sites.google.com/site/thomasevangelidishomepage/

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