From: Ramin Ekhteiari (ramin_ekh_at_yahoo.com)
Date: Sun Nov 24 2013 - 08:21:04 CST
Is it reasonable? ( diffusion of protein ). But when protein cross the boundary of the box, the periodic images will
interact with themselves affecting the outcome of the simulation.
On Sunday, November 24, 2013 4:14 PM, Axel Kohlmeyer <akohlmey_at_gmail.com> wrote:
On Sun, Nov 24, 2013 at 3:06 PM, Ramin Ekhteiari <ramin_ekh_at_yahoo.com> wrote:
> I did a MD for a protein at a water box via NAMD, but during simulation the
> protein diffuse along the box and cross the boundary.
> Would be grateful for any help.
help to do what?
Dr. Axel Kohlmeyer akohlmey_at_gmail.com http://goo.gl/1wk0
International Centre for Theoretical Physics, Trieste. Italy.
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