From: Jacqueline Schmidt (jacqueline_schmidt_1983_at_yahoo.com)
Date: Tue Aug 28 2012 - 10:20:02 CDT
Dear NAMD users,
I have car/mdf files of a non-rectangular clay surface which I want to run with NAMD. I know how to make the pdb and psf files for the rectangular systems but I wonder which modifications and in which files (pdb or psf or conf) I have to make in order to run non-rectangular system. Can anyone please make a comment (or if you could kindly send an example) of a non-rectangular system set up?
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