From: Michel Espinoza-Fonseca (mef_at_ddt.biochem.umn.edu)
Date: Thu Aug 09 2012 - 08:18:40 CDT
Could you please be a bit more specific on what exactly is the problem you're encountering? I'm pretty sure that "something" is actually happening, i.e., most likely a .dat file containing RMSD per residue is written in your working directory.
From: owner-namd-l_at_ks.uiuc.edu [owner-namd-l_at_ks.uiuc.edu] On Behalf Of Branko [bdrakuli_at_chem.bg.ac.rs]
Sent: Thursday, August 09, 2012 7:50 AM
Subject: namd-l: residue_rmsd.tcl via
Dear NAMD users,
Is anybody succeed to execute script 'residue_rmsd.tcl' in Windows VMD
(1.8.7) on their own protein. Likely, main question is where: fie.psf,
file.dcd and residue_rmsd.tcl script should be placed. I try to put
all files in one directory, but after loading psf file in VMD and
loadinfg DCD 'into' psf, then invoking 'source residue_rmsd.tcl' in
console nothing happen. Think that this question is more suitable for
namd-l than vmd-l because queering namd tutorial files.
Thank you for any advice
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