From: Eduard Schreiner (eduard.schreiner_at_gmail.com)
Date: Sat Aug 04 2012 - 16:36:38 CDT
actually, you may want to check the "extrabonds" option available in
NAMD. This will allow you to define additional "springs".
Check if it suits your purpose.
On Sat, Aug 4, 2012 at 11:31 AM, SONY kaur <sonymaru_at_gmail.com> wrote:
> Hi ,
> I want to create a network model of protein in which two atoms are
> connected by springs. Generally this done in vmd by " label addspring molid
> atomid1 atomid2 k. If i want to do for entire protein , how can i do that .
> How to store this structure with springs between atoms.
> Ph.D student,
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