From: Chris Harrison (charris5_at_gmail.com)
Date: Sun Oct 31 2010 - 08:28:58 CDT
Use VMD. Under Extensions menu: Extensions>Analysis>RMSD Trajectory Tool
On Sat, Oct 30, 2010 at 3:41 AM, <matziast_at_med.uth.gr> wrote:
> Hi, I want to calculate the rmsd of an antibiotic with a script, but I have
> script only for proteins. Could anyone tell me where I can find. Also, I
> to learn how to write script. I must read tutorials of tcl only or
> especially for namd?
> Thank you in advance.
-- Chris Harrison, Ph.D. Theoretical and Computational Biophysics Group NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801 char_at_ks.uiuc.edu Voice: 217-244-1733 http://www.ks.uiuc.edu/~char Fax: 217-244-6078
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