degrees of freedom

From: Jorgen Simonsen (
Date: Sat Sep 11 2010 - 00:26:10 CDT


I would like to calculate the degrees of freedom in my system - I have a
protein with 100 residues and is solvated with 3000 water molecules as TIP3P
- does NAMD or VMD print out that information - if not how many degrees of
freedom are within one TIP3P molecule?


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