From: Jin Liu (jliunih_at_gmail.com)
Date: Tue Mar 30 2010 - 14:29:15 CDT
I did a few MD simulations with the the minimum distance from the protein to
the edge of the water box as 10 angstrom. The simulations ran smoothly
without any problem. I am wondering what I could do to confirm the water box
is big enough? Should I measure the distance between the protein and its
image in the other boxes during the simulation? Or what else can I do to
convince people that the water box is not too small?
Thank you very much.
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