Re: tutorial-l: Nanotubes tutorial - coorList(577) no such element

From: Drew buschhorn (drewbuschhorn_at_gmail.com)
Date: Thu Feb 18 2010 - 20:30:10 CST

Thanks for the tip. Swapped over to NAMD2.6 for Windows and didn't have any
further problems.

Thanks again,
Drew.

On Thu, Feb 18, 2010 at 4:09 AM, Jian Liu <bay__gulf618_at_sina.com> wrote:

> Dear Drew.
> As far as I know, there are some bugs about TclForce commands (such as
> loadcoords,
> loadforces and loadmasses) on NAMD2.7b1/2_windows. I suggest that you
> change you
> computing platform to Linux or have a try with NAMD2.6_windows.
>
> May It can help you.
>
> Jian Liu
> Master-degree graduate candidate majoring in Molecular Modelling
> Outstanding Students and PhD. Wanted
> CV: http://docs.google.com/View?id=ddgsqr48_1g4f3dmfq
>
> ----- Original Message -----
> From: Drew buschhorn <drewbuschhorn_at_gmail.com>
> To: namd-l_at_ks.uiuc.edu
> Subject: namd-l: tutorial-l: Nanotubes tutorial - coorList(577) no such
> element
> Date: 2010-2-18 14:45:24
>
> Hello, ( cross posted to tutorial-l first, but it doesn't seem to be active
> )
>
> Thanks for making NAMD and VMD avalible to the
> public. I'm not using NAMD for actual research, so
> please feel free to drop this into your low priority queue.
>
> Iíve been attempting to complete the nanotubes tutorial:
>
>
> http://www.ks.uiuc.edu/Training/TutorialsOverview/science/nanotubes/nanotubes.pdf
>
> However, in step 3.1: Submitting sim_short.conf,
> I'm unable to submit my processing request. When I
> execute the command, it begins processing, then the Tcl interpreter dies
> with the error:
>
> TCL: can't read "coorList(577)": no such element in array.
>
> I know a little bit of Tcl and have tried to investigate the
> error myself, but with little success. The wiki and previous digests
> also don't seem to have any similar reports.
>
> I'm not quite sure how to proceed, so if anyone has any time
> to give advice, I would appreciate it. I
> have included my debug information below, and attached a log of my
> attempt to run the command sequence described in 3.1.
>
>
>
> Drew.
>
> Former Inorganic ChemistDebug info
>
> OS: Windows Vista x64
>
> NAMD version: Version 2.7b2 (2009-11-12) Win32
>
> VMD version: Version 1.8.7 (2009-08-01) Win32 OpenGL
>
> Nanotubes files version:
> http://www.ks.uiuc.edu/Training/Tutorials/science/nanotubes/nanotubes-tutorial-files.zip
> Note: I have been successful at running the same tutorial files using the
> NAMD linux binaries:
>
> http://www.ks.uiuc.edu/Research/namd/2.7b2/download/279627/NAMD_2.7b2_Linux-x86.tar.gz
>
>
>

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