Re: dcd

From: Ajasja Ljubetič (
Date: Mon Feb 01 2010 - 05:40:14 CST

Yes, on the nain window (VMD main) at the bottom there is a slider you can
use tomove frames.

or you can type into tk console.

animate goto <frame number>

On Mon, Feb 1, 2010 at 12:30, ipsita basu <> wrote:

> Thank you very much. I can see the picture. But according to your
> suggestions I use the psf file and mu output.dcd file and I can see the
> picture. But how can I understand that this picture is for which step? Can
> you please help me?
> On 2/1/10, Ajasja Ljubetič <> wrote:
>> Perhaps you should take a look at the VMD tutorial.
>> In short:
>> Start VMD, go to Extensions -> tk console
>> type (pres enter after each line, replace the text between <> with the
>> appropriate paths)
>> cd <path to my directory>
>> mol load psf <mypsf>.psf dcd <mydcd>.dcd
>> Regards,
>> Ajasja
>> On Mon, Feb 1, 2010 at 10:27, ipsita basu <> wrote:
>>> Dear all,
>>> I am running simulations using namd where I get output.dcd
>>> file for analysis at the last. But I want to see the snapshots after each
>>> step. I use dcd freq as 2500. How can I see the pictures of my system after
>>> each step? Unless I can see the picture I can't understand my simulation is
>>> going wrong or right. I really really need to be able to see the system--0016e6d46d7dd86d5c047e88720f--

This archive was generated by hypermail 2.1.6 : Wed Feb 29 2012 - 15:53:44 CST