From: CHINDEA Vlad (vchindea_at_hotmail.com)
Date: Fri Nov 20 2009 - 17:57:29 CST
I allways run with
namd2 xxx.conf > yyy.log
and it is not an issue of psf, pdb, param files (which BTW are exactly placed as suggested) because the program hangs up before needing any of these resources (as witnessed by log file).
I think there has to be some other more obscure reason for this behaviour.
Subject: RE: namd-l: simulation configuration file not accesible - other reasons
Date: Thu, 19 Nov 2009 17:38:15 -0600
Did you specify your configuration file (e.g.
run.conf) in command prompt?
namd2.exe +p2 run.conf
I usually copy namd2.exe and all input
files in the same directory.
Configuration file (e.g., run.conf)
The files specified in configuration file:
Structure file (*.psf)
Coordinate file (*.pdb)
Parameter file used to
make psf (e.g., par_all27_prot_lipid_na.inp)
You need to specify those files in the
[mailto:owner-namd-l_at_ks.uiuc.edu] On Behalf
Of CHINDEA Vlad
Sent: Thursday, November 19, 2009
To: NAMD list
Subject: namd-l: simulation
configuration file not accesible - other reasons
I recently installed pre-compiled NAMD on a Windows platform but when trying to
run tutorial sample files I get all the time the above message.
Besides obviouse problems like path issues are there any other possible causes
for this error ?
I have tryed placing all simulation files in NAMD directory (which is declared
in PATH variable), or used absolute paths but nothing works.
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