From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Sun Nov 08 2009 - 19:33:18 CST
On Sun, 2009-11-08 at 20:24 -0500, Sebastian Stolzenberg wrote:
> Can I thus assume that "rigidBonds all" really only constrains bonds
> (for hydrogens attached to non-water heavy atoms)? If no, what angles
> does NAMD "rigidBonds all" constrain for the protein?
from which part of rigid_Bonds_ do you infer
that any angles are constrained as well?
if you need confirmation, just look at a trajectory.
you can use VMD to measure the instantaneous values
of bonds/angles/dihedrals during the trajectory.
> Thank you very much for your help,
-- Dr. Axel Kohlmeyer akohlmey_at_gmail.com Institute for Computational Molecular Science College of Science and Technology Temple University, Philadelphia PA, USA.
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