From: Axel Kohlmeyer (akohlmey_at_gmail.com)
Date: Sat Oct 24 2009 - 11:30:45 CDT
On Sat, 2009-10-24 at 12:42 +0530, Sangamesh B wrote:
> Dear Namd users,
> I've installed NAMD on a Linux HPC cluster by both ways (1)
> Downloading binaries (2) By compiling the source with Open MPI.
> To test the scaling of Namd, I downloaded the standard benchmark apoa1
> from NAMD website. After doing the benchmark I found that its taking
> very little time 3-4 minutes to complete(with 4 cores), but on the
> website its shown its taking 4days to complete.
please explain where it says that it takes this long?
the input does just a few hundred steps. any benchmark
that would need 4 days to complete is very impractical.
> May I know what mistake am doing here?
you are must be misreading something.
> On the website, there is no info provided about how to do the
you just run it like any other namd input.
-- Dr. Axel Kohlmeyer akohlmey_at_gmail.com Institute for Computational Molecular Science College of Science and Technology Temple University, Philadelphia PA, USA.
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