From: Sangamesh B (forum.san_at_gmail.com)
Date: Sat Oct 24 2009 - 02:12:05 CDT
Dear Namd users,
I've installed NAMD on a Linux HPC cluster by both ways (1)
Downloading binaries (2) By compiling the source with Open MPI.
To test the scaling of Namd, I downloaded the standard benchmark apoa1 from
NAMD website. After doing the benchmark I found that its taking very little
time 3-4 minutes to complete(with 4 cores), but on the website its shown its
taking 4days to complete.
May I know what mistake am doing here?
On the website, there is no info provided about how to do the benchmark.
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