From: BIN ZHANG (zhngbn_at_gmail.com)
Date: Thu Oct 22 2009 - 01:46:10 CDT
This might be a question no so NAMD related, but I would really
appreciate if you could give me any suggestion.
I was trying to run several jobs, say 100, sequentially in a pbs
script using a simple loop. It works really great, except at some
point, the simulation would simply exist from the queue. I found the
following line in the PBS error file while checking :
FATAL ERROR: Unable to open extended system file.
This suggests to me that the NAMD output file is missing. However, the
*.xsc file is actually correctly outputted. So what's the problem
then? Is it because the newly generated file not ready for reading yet?
I tried to put wait between submissions, but the same error still occur.
Any suggestion is appreciated.
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