From: Chris Harrison (char_at_ks.uiuc.edu)
Date: Thu Jul 09 2009 - 09:49:25 CDT
Which version of namd are you using; ie, 2.6 vs 2.7b1?
Was it compiled from source or downloaded as a binary?
Is it a from the CVS? If so, when?
Which version of charm++ are you using?
Are you using MPI ? If so, which flavor and which version?
-- Chris Harrison, Ph.D. Theoretical and Computational Biophysics Group NIH Resource for Macromolecular Modeling and Bioinformatics Beckman Institute for Advanced Science and Technology University of Illinois, 405 N. Mathews Ave., Urbana, IL 61801 char_at_ks.uiuc.edu Voice: 217-244-1733 http://www.ks.uiuc.edu/~char Fax: 217-244-6078 On Mon, Jul 6, 2009 at 4:10 PM, Goutham <gouthambs_at_gmail.com> wrote: > Hey All, > When I do a MD run using Charmrun and namd, I get the following error: > > FATAL ERROR: Tried to find atom type on node other than node 0 > > However, when I do a single processor run, without charmrun, the error > doesn't occur. And the program works just fine. Does any one have any idea > on what is happening here? > > Thanks > Goutham > > PS: Stack Trace - > > FATAL ERROR: Tried to find atom type on node other than node 0 >  Stack Traceback: >  CmiAbort+0x5f [0xa4b62f] >  _Z8NAMD_diePKc+0x62 [0x4ffe02] >  _ZN8Molecule17build_atom_statusEv+0x1629 [0x88a8a5] >  _ZN8Molecule16receive_MoleculeEP8MIStream+0xdb3 [0x88380d] >  _ZN4Node11namdOneRecvEv+0x4b7 [0x8a0907] >  _ZN4Node7startupEv+0xebe [0x89fcba] >  _ZN12CkIndex_Node18_call_startup_voidEPvP4Node+0x12 [0x89edf8] >  CkDeliverMessageFree+0x21 [0x9c2af1] >  _Z15_processHandlerPvP11CkCoreState+0x509 [0x9c20e5] >  CsdScheduleForever+0xa5 [0xa4c42d] >  CsdScheduler+0x1c [0xa4c02e] >  _Z11master_initiPPc+0x280 [0x508c20] >  _ZN7BackEnd4initEiPPc+0x31 [0x508999] >  main+0x2f [0x50432f] >  __libc_start_main+0xdb [0x3486b1c3fb] >  _ZNSt8ios_base4InitD1Ev+0x4a [0x4ff76a] > >
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