Re: regarding positioning of protein molecule

From: Eric H. Lee (
Date: Wed Jun 24 2009 - 17:46:53 CDT

If you want to save the coordinates, you can always call up the
TkConsole, make a selection and save to PDB.


set sel [atomselect top all]
$sel writepdb newstructure.pdb

Eric H. Lee
Medical Scholars Program
Theoretical and Computational Biophysics Group, UIUC

On Jun 24, 2009, at 5:39 PM, prasun kumar wrote:

> Dear all
> I have a problem regarding placement of the protein.
> I want to place my protein on a particular orientation.using VMD I
> can translate and get the new coordinate,but it doesnot work when we
> want to rotate the molecule and hence save the coordinates.
> Is there any software for doing so.waitting for positive response
> with regards and thanx in advance

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