**From:** sripad chandan (*sripadchandan_at_gmail.com*)

**Date:** Sun Feb 01 2009 - 22:46:14 CST

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Friends,

I want to calculate the Correlation matrix of the Ca atoms (motion) in

a 5 ns simulation done on NAMD, so that the relationship of the

residual and domain motion can be found out.

Is there any possibility of doing it by NAMD/VMD?

It will be very helpful if some one can give a suggestion atleast.

Thanks alot.

Chandan

-- Sripad Chandan Patnaik Research Assistant National Institute of Technology, Rourkela +91-9861668977

**Next message:**Joshua Adelman: "Re: Correlation matrix of the Ca atoms"**Previous message:**Chris Chipot: "Re: combining abf reaction path"**Next in thread:**Joshua Adelman: "Re: Correlation matrix of the Ca atoms"**Reply:**Joshua Adelman: "Re: Correlation matrix of the Ca atoms"**Reply:**Nicholas M Glykos: "Re: Correlation matrix of the Ca atoms"**Messages sorted by:**[ date ] [ thread ] [ subject ] [ author ] [ attachment ]

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