Re: Creating bonds during a run

From: Axel Kohlmeyer (
Date: Mon Jan 12 2009 - 10:09:24 CST

On Mon, 12 Jan 2009, Marcin S. wrote:

MS> Hello,

MS> Is there any way to create bonds during a NAMD run? Or, is it
MS> possible to "glue" two particles together during a run?

how about adding a restraint and cranking up the force
constant during the run?


MS> Thanks,
MS> Marcin S.

Axel Kohlmeyer
   Center for Molecular Modeling   --   University of Pennsylvania
Department of Chemistry, 231 S.34th Street, Philadelphia, PA 19104-6323
tel: 1-215-898-1582,  fax: 1-215-573-6233,  office-tel: 1-215-898-5425
If you make something idiot-proof, the universe creates a better idiot.

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