Flushing output: MPI version of NAMD on AMD64

From: Vani Krishna (vakri2002_at_yahoo.com)
Date: Tue Oct 10 2006 - 00:00:31 CDT

Hello,
 
 I have been running MPI version of NAMD 2.6 on AMD64 cluster (Cray XD1). But I do not have any output until the run is completed, and even then, the output is flushed into .o file intead of the file I specify as output file. is there anyway to force flush the output at some regular intervals?
 
 Here is my PBS submission script:
 
 #!/bin/sh
 #PBS -l nodes=2:ppn=4
 #PBS -l walltime=72:00:00
 #PBS -N test
 #PBS -q work
 #PBS
 #
 
 ##################################################################
 #CONFIG: change this
 jobcfg=test.conf
 jobout=test.out
 # use submit directory
 #jobdir=${PBS_O_WORKDIR}
 # alt. set explicite dir
 #END CONFIG
 ##################################################################
 mpiexec /home/vani/NAMD-2.6-Source/NAMD_2.6_Source-MPI-linux/Linux-amd64-MPI/namd2 $jobcfg > $jobout
 ------------------------------------------------------------------------------------------------------------------
 
                 
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