From: snoze pa (snoze.pa_at_gmail.com)
Date: Fri Feb 10 2006 - 10:58:27 CST
Dear NAMD community,
I am doing my simulatin at NPT. My simulation is going fine till heating.
ut for Free MD simulation My water box size is increasing in one direction.
While the postion of the protein remain same. I don't know what is wrong
with this? I am also attaching after 1ns simulation protein and waterbox
snapshot.Here are two snapshot
1. namdmin.png for after minimization
2. namd1ns.png is after 1ns free run.
I don't know why my water box size is increasing in one direction.
thanks in advance
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