NAMD
Class Hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
[detail level 1234]
oC__sort_entry
oCAGroup
oCALambdaControl
oCALambdaManager
oCangle
oCangle_params
oCAngleElem
oCAngleTable
oCAngleValue
oCaniso
oCAnisoElem
oCARestraint
oCARestraintManager
oCmsm::Array< T >
oCArray< Elem, Size >
oCmsm::Array< AtomCoord >
oCmsm::Array< C1Matrix >
oCmsm::Array< C1Vector >
oCmsm::Array< CProxy_MsmBlock >
oCmsm::Array< CProxy_MsmC1HermiteBlock >
oCArray< double, Size >
oCmsm::Array< Float >
oCmsm::Array< Force >
oCmsm::Array< int >
oCmsm::Array< msm::BlockDiagram >
oCmsm::Array< msm::BlockSend >
oCmsm::Array< msm::FoldFactor >
oCmsm::Array< msm::Grid< C1Matrix > >
oCmsm::Array< msm::Grid< Float > >
oCmsm::Array< msm::Grid< msm::BlockDiagram > >
oCmsm::Array< msm::IndexRange >
oCmsm::Array< msm::PatchDiagram >
oCmsm::Array< msm::PatchSend >
oCmsm::Array< Mtype >
oCArray< PatchData * >
oCmsm::Array< Vtype >
oCassert_ProxyResultVarsizeMsg
oCatom_constants
oCatom_name_info
oCmsm::AtomCoord
oCAtomCstInfo
oCatomID_less
oCAtomMap
oCAtomMapper
oCAtomNameIdx
oCAtomSigInfo
oCAtomSignature
oCAtomTable
oCAVector
oCBackEnd
oCBasicAtomInfo
oCmsm::BlockDiagram
oCmsm::BlockIndex
oCmsm::BlockSend
oCBOCgroup
oCBOID
oCbond
oCbond_params
oCComputeBondedCUDAKernel::BondedVirial< T >
oCBondElem
oCBondTable
oCBondValue
oCBoundingBox
oCBox< Owner, Data >
oCBox< Patch, CompAtom >
oCBox< Patch, GBReal >
oCBox< Patch, int >
oCBox< Patch, Real >
oCBox< Patch, Results >
oCBroadcastClient
oCBroadcastClientElem
oCC1Matrix
oCC1Vector
oCCBase_BroadcastMgr
oCCBase_CollectionMgr
oCCBase_ComputeCUDAMgr
oCCBase_ComputeExtMgr
oCCBase_ComputeFmmSerialMgr
oCCBase_ComputeGBISserMgr
oCCBase_ComputeMgr
oCCBase_ComputeMsmMgr
oCCBase_ComputeMsmSerialMgr
oCCBase_ComputePmeCUDADevice
oCCBase_ComputePmeCUDAMgr
oCCBase_ComputePmeMgr
oCCBase_ComputeQMMgr
oCCBase_CudaPmePencilX
oCCBase_CudaPmePencilXY
oCCBase_CudaPmePencilXYZ
oCCBase_CudaPmePencilY
oCCBase_CudaPmePencilZ
oCCBase_DataExchanger
oCCBase_LdbCoordinator
oCCBase_MsmBlock
oCCBase_MsmC1HermiteBlock
oCCBase_MsmC1HermiteGridCutoff
oCCBase_MsmGridCutoff
oCCBase_MsmProfiler
oCCBase_MsmTimer
oCCBase_Node
oCCBase_NodePmeMgr
oCCBase_NodeProxyMgr
oCCBase_ParallelIOMgr
oCCBase_PatchMgr
oCCBase_PmeAtomFiler
oCCBase_PmePencilMap
oCCBase_PmePencilX
oCCBase_PmePencilXMap
oCCBase_PmePencilXY
oCCBase_PmePencilXYMap
oCCBase_PmePencilXYZ
oCCBase_PmePencilXYZMap
oCCBase_PmePencilY
oCCBase_PmePencilZ
oCCBase_PmeXPencil
oCCBase_PmeYPencil
oCCBase_PmeZPencil
oCCBase_ProxyMgr
oCCBase_Sync
oCCBase_WorkDistrib
oCCentralLB
oCChare
oCController::checkpoint
oCHomePatch::checkpoint_t
oCCkArrayMap
oCCkMcastBaseMsg
oCClusterCoorElem
oCClusterElem
oCCMessage_AtomsCntPerPatchMsg
oCCMessage_BroadcastMsg
oCCMessage_CheckpointAtomsMsg
oCCMessage_CheckpointAtomsReqMsg
oCCMessage_CheckpointMsg
oCCMessage_ClusterCoorMsg
oCCMessage_ClusterSizeMsg
oCCMessage_CollectLoadsMsg
oCCMessage_CollectVectorMsg
oCCMessage_CollectVectorVarMsg
oCCMessage_ComputeConsForceMsg
oCCMessage_ComputeDPMEDataMsg
oCCMessage_ComputeDPMEResultsMsg
oCCMessage_ComputeEwaldMsg
oCCMessage_ComputeGlobalDataMsg
oCCMessage_ComputeGlobalResultsMsg
oCCMessage_ComputeMapChangeMsg
oCCMessage_CudaComputeNonbondedMsg
oCCMessage_CudaPmeXInitMsg
oCCMessage_CudaPmeXYInitMsg
oCCMessage_CudaPmeXYZInitMsg
oCCMessage_DataStreamMsg
oCCMessage_DeviceDataMsg
oCCMessage_ExchangeAtomsMsg
oCCMessage_ExchangeAtomsReqMsg
oCCMessage_ExtCoordMsg
oCCMessage_ExtForceMsg
oCCMessage_FinishWorkMsg
oCCMessage_FmmSerialCoordMsg
oCCMessage_FmmSerialForceMsg
oCCMessage_GBISCoordMsg
oCCMessage_GBISForceMsg
oCCMessage_GridMsg
oCCMessage_GroupInitMsg
oCCMessage_HydroBasedMsg
oCCMessage_InitDeviceMsg
oCCMessage_InitDeviceMsg2
oCCMessage_LdbMigrateMsg
oCCMessage_LocalLBInfoMsg
oCCMessage_LocalWorkMsg
oCCMessage_MigrateAtomsCombinedMsg
oCCMessage_MigrateAtomsMsg
oCCMessage_MolInfoMsg
oCCMessage_MoveAllByMsg
oCCMessage_MoveAtomMsg
oCCMessage_MoveInputAtomsMsg
oCCMessage_MovePatchAtomsMsg
oCCMessage_MovePatchesMsg
oCCMessage_MsmBlockProxyMsg
oCCMessage_MsmC1HermiteBlockProxyMsg
oCCMessage_MsmC1HermiteGridCutoffProxyMsg
oCCMessage_MsmC1HermiteGridCutoffSetupMsg
oCCMessage_MsmGridCutoffInitMsg
oCCMessage_MsmGridCutoffProxyMsg
oCCMessage_MsmGridCutoffSetupMsg
oCCMessage_MsmInitMsg
oCCMessage_MsmSerialCoordMsg
oCCMessage_MsmSerialForceMsg
oCCMessage_NonbondedCUDASkipMsg
oCCMessage_NonbondedCUDASlaveMsg
oCCMessage_NonbondedMICSkipMsg
oCCMessage_NonbondedMICSlaveMsg
oCCMessage_NumDevicesMsg
oCCMessage_PatchMapMsg
oCCMessage_PatchProxyListMsg
oCCMessage_PmeAckMsg
oCCMessage_PmeAtomMsg
oCCMessage_PmeAtomPencilMsg
oCCMessage_PmeBlockMsg
oCCMessage_PmeDoneMsg
oCCMessage_PmeEvirMsg
oCCMessage_PmeForceMsg
oCCMessage_PmeForcePencilMsg
oCCMessage_PmeGridMsg
oCCMessage_PmeLaunchMsg
oCCMessage_PmePencilInitMsg
oCCMessage_PmeRunMsg
oCCMessage_PmeSharedTransMsg
oCCMessage_PmeSharedUntransMsg
oCCMessage_PmeStartMsg
oCCMessage_PmeTransMsg
oCCMessage_PmeUntransMsg
oCCMessage_ProxyCombinedResultMsg
oCCMessage_ProxyCombinedResultRawMsg
oCCMessage_ProxyDataMsg
oCCMessage_ProxyGBISP1ResultMsg
oCCMessage_ProxyGBISP2DataMsg
oCCMessage_ProxyGBISP2ResultMsg
oCCMessage_ProxyGBISP3DataMsg
oCCMessage_ProxyNodeAwareSpanningTreeMsg
oCCMessage_ProxyResultMsg
oCCMessage_ProxyResultVarsizeMsg
oCCMessage_ProxySpanningTreeMsg
oCCMessage_QMCoordMsg
oCCMessage_QMForceMsg
oCCMessage_QMGrpCalcMsg
oCCMessage_QMGrpResMsg
oCCMessage_QMPntChrgMsg
oCCMessage_RecvDeviceMsg
oCCMessage_ReductionRegisterMsg
oCCMessage_ReductionSubmitMsg
oCCMessage_RegisterPatchMsg
oCCMessage_RegisterProxyMsg
oCCMessage_ScriptParamMsg
oCCMessage_SetLatticeMsg
oCCMessage_SlaveInitMsg
oCCMessage_SplitComputesMsg
oCCMessage_UnregisterProxyMsg
oCCollectProxyVectorInstance
oCCollectProxyVectorSequence
oCCollectionMaster::CollectVectorInstance
oCCollectionMgr::CollectVectorInstance
oCCollectionMgr::CollectVectorSequence
oCCollectionMaster::CollectVectorSequence
oCcolvarproxy
oCCommunicate
oCCompAtom
oCCompAtomExt
oCCompute
oCComputeNonbondedCUDA::compute_record
oCComputeNonbondedMIC::compute_record
oCComputeBondedCUDAKernel
oCComputeMap::ComputeData
oCComputeExtAtom
oCComputeFmmSerialAtom
oCComputeGBISAtom
oCComputeMap
oCComputeMsmSerialAtom
oCComputeNonbondedUtil
oCComputeNonbondedWorkArrays
oCComputePmeUtil
oCComputeQMAtom
oCComputeQMPntChrg
oCCudaComputeNonbonded::ComputeRecord
oCConfigList
oCConfigList::ConfigListNode
oCConstPointer
oCControllerBroadcasts
oCControllerState
oCcptr_sortop_priority
oCcr_sortop_distance
oCcr_sortop_reverse_priority
oCcrossterm
oCcrossterm_params
oCCrosstermData
oCCrosstermElem
oCCrosstermValue
oCcuda_args_t
oCComputePmeMgr::cuda_submit_charges_args
oCCudaAngle
oCCudaAngleValue
oCCudaAtom
oCCudaBond
oCCudaBondValue
oCCudaComputeGBISKernel
oCCudaComputeNonbondedKernel
oCCudaComputeRecord
oCCudaCrossterm
oCCudaCrosstermValue
oCCudaDihedral
oCCudaDihedralValue
oCCudaExclusion
oCCudaForce
oCCudaNonbondedTables
oCCudaPatchRecord
oCCudaStaticAssert< bool >
oCCudaStaticAssert< true >
oCCudaTileListKernel
oCParseOptions::DataElement
oCDataMessage
oCDeviceBuffer
oCDeviceCUDA
oCdihedral
oCdihedral_params
oCDihedralElem
oCDihedralTable
oCDihedralValue
oCdoublecomplex
oCdrude_constants
oCdummyData
oCeABF
oCEntry< Elem >
oCEntry< BOID >
oCEntry< BroadcastClientElem >
oCEntry< ClusterCoorElem >
oCEntry< ClusterElem >
oCEntry< Exclusion >
oCEntry< ProxyElem >
oCEntry< T >
oCEntry< TaggedMsg >
oCEntry< TuplePatchElem >
oCEntryGlob< Elem >
oCEntryGlob< BOID >
oCEntryGlob< BroadcastClientElem >
oCEntryGlob< ClusterCoorElem >
oCEntryGlob< ClusterElem >
oCEntryGlob< Exclusion >
oCEntryGlob< ProxyElem >
oCEntryGlob< T >
oCEntryGlob< TaggedMsg >
oCEntryGlob< TuplePatchElem >
oCEwaldParticle
oCexclmask
oCExclSigInfo
oCExclusion
oCExclusionCheck
oCExclusionSignature
oCexlist_sortop
oCExtForce
oCFFTCompute
oCFileStack
oCFlags
oCfloat2
oCfloatcomplex
oCOutputAtomRecord::floatVals
oCFloatVector
oCmsm::FoldFactor
oCfour_body_consts
oCgather_t< T, order >
oCGBISInput< phase >
oCGBISInput< 1 >
oCGBISInput< 2 >
oCGBISInput< 3 >
oCGBISParam< phase >
oCGBISParam< 1 >
oCGBISParam< 2 >
oCGBISParam< 3 >
oCGBISParamStruct
oCGBISResults< phase >
oCGBISResults< 1 >
oCGBISResults< 2 >
oCGBISResults< 3 >
oCGenericAngle
oCGenericAtom
oCGenericBond
oCGenericDihedral
oCGenericMol
oCGlobalMaster
oCGlobalMasterServer
oCgo_pair
oCgo_val
oCGridforceFullBaseGrid
oCGridforceGrid
oCGridforceFullBaseGrid::GridIndices
oCGroGaussPair
oCGroLJPair
oCgromacsPair
oCGromacsPairElem
oCGromacsPairValue
oCGromacsTopFile
oCGroup
oCHashPool< T >
oCHashPoolAdaptorT< T >
oCHashReal
oCheapIterator
oCheapRecord
oCHomePatchElem
oCHybridBaseLB
oCHydrogenGroupID
oCidIndxStr
oCijpair
oCijpair_sortop_bit_reversed
oCIMDEnergies
oCIMDheader
oCIMDOutput
oCimproper
oCimproper_params
oCImproperElem
oCImproperValue
oCindexed_nbthole_pair
oCindexed_table_pair
oCindexed_vdw_pair
oCmsm::IndexRange
oCInfoRecord
oCInt2
oCInt3
oCOutputAtomRecord::integerVals
oCInterpParams_t
oCintpair
oCIRSet
oCIterator
oCmsm::Ivec
oCLattice
oCLCPOAtom
oCLCPONeighborList
oClistNode
oCLJTable
oCLocalID
oCLocalPmeInfo
oClphost
oCLSSDataStr
oClssDistSort
oCLSSSubsDat
oCmsm::Map
oCMatrix44x4 matrix class with numerous operators, conversions, etc
oCMatrix4Symmetry
oCMatrix4TMD
oCmaxHeap
oCMeasure
oCmeMMQMGrp
oCmemusageinit
oCMGridforceParams
oCMGridforceParamsList
oCMigrationInfo
oCminHeap
oCminpoint
oCMIStream
oCMoaData
oCMolecule
oCMolInst
oCMOStream
oCMovePatch
oCMsmBlockKernel< Vtype, Mtype >
oCMsmBlockKernel< C1Vector, C1Matrix >
oCMsmBlockKernel< Float, Float >
oCMsmGridCutoffKernel< Vtype, Mtype >
oCMsmGridCutoffKernel< C1Vector, C1Matrix >
oCMsmGridCutoffKernel< Float, Float >
oCNamdProfileEvent
oCNamdState
oCnbthole_pair_params
oCnbthole_pair_value
oCnetintStructure used to perform byte swapping operations
oCNL_Msm_t
oCNodePmeInfo
oCnodesort
oCnonbonded
oCNonbondedExclValue
oCObjectArena< Type >
oCObjectArena< char >
oCObjectArena< ComputeID >
oCObjectArena< int32 >
oCostringstream
oCOutput
oCOutputAtomRecord
oCOwnerBox< Owner, Data >
oCOwnerBox< Patch, CompAtom >
oCOwnerBox< Patch, GBReal >
oCOwnerBox< Patch, int >
oCOwnerBox< Patch, Real >
oCOwnerBox< Patch, Results >
oCPairlists
oCPairTable
oCPAL
oCParameters
oCparm
oCParseOptions
oCPatch
oCComputeNonbondedCUDA::patch_record
oCComputeNonbondedMIC::patch_record
oCpatch_sortop_curve_a
oCpatch_sortop_curve_b
oCpatch_sortop_curve_c
oCmsm::PatchData
oCpatchDataStrc
oCmsm::PatchDiagram
oCPatchElem
oCPatchInfo
oCPatchMap
oCPatchPairRecord
oCComputeMap::PatchRec
oCCudaComputeNonbonded::PatchRecord
oCmsm::PatchSend
oCRebalancer::pcpair
oCPDB
oCPDBData
oCpe_sortop_bit_reversed
oCWorkDistrib::pe_sortop_compact
oCpe_sortop_coord_x
oCpe_sortop_coord_y
oCWorkDistrib::pe_sortop_diffuse
oCTopoManagerWrapper::pe_sortop_topo
oCpid_sortop_reverse_priority
oCPluginIOMgr
oCPmeAtomStorage
oCPmeGrid
oCPmeKSpace
oCPmeKSpaceCompute
oCPmeParticle
oCPmePencilInitMsgData
oCPmeRealSpace
oCPmeRealSpaceCompute
oCPmeTranspose
oCpntChrgDist
oCPointer
oCposition_index
oCPressureProfileReduction
oCmsm::PriorityQueue< T >
oCProxyElem
oCProxyListInfo
oCProxyTree
oCproxyTreeNode
oCProxyUsage
oCProxyUsageKey
oCQMAtomData
oCQMForce
oCqmSolvData
oCRandom
oCHomePatch::RattleList
oCRattleParam
oCRebalancer
oCRecBisection
oCRecipVirial_t
oCReductionSet
oCReductionSetData
oCrefSelStr
oCReplicaDcdAckMsg
oCReplicaDcdDataMsg
oCReplicaDcdInitMsg
oCRequireReduction
oCResidueLookupElem
oCResizeArray< T >
oCResizeArray< __sort_entry >
oCResizeArray< AngleElem >
oCResizeArray< AnisoElem >
oCResizeArray< AtomID >
oCResizeArray< BigReal >
oCResizeArray< bond >
oCResizeArray< BondElem >
oCResizeArray< char * >
oCResizeArray< char >
oCResizeArray< ClusterCoorMsg * >
oCResizeArray< ClusterSizeMsg * >
oCResizeArray< CollectionMaster::CollectVectorInstance * >
oCResizeArray< CollectionMgr::CollectVectorInstance * >
oCResizeArray< CollectProxyVectorInstance * >
oCResizeArray< CompAtom >
oCResizeArray< CompAtomExt >
oCResizeArray< ComputeGlobalResultsMsg * >
oCResizeArray< ComputeID * >
oCResizeArray< ComputeMap::ComputeData >
oCResizeArray< ComputeNonbondedCUDA::compute_record >
oCResizeArray< ComputeNonbondedCUDA::patch_record >
oCResizeArray< ComputeNonbondedMIC::compute_record >
oCResizeArray< ComputeNonbondedMIC::patch_record >
oCResizeArray< ComputePme * >
oCResizeArray< const char * >
oCResizeArray< const GenericAngle * >
oCResizeArray< const GenericAtom * >
oCResizeArray< const GenericBond * >
oCResizeArray< const GenericDihedral * >
oCResizeArray< const MolInst * >
oCResizeArray< const Real * >
oCResizeArray< CrosstermElem >
oCResizeArray< CudaAtom >
oCResizeArray< DihedralElem >
oCResizeArray< Elem >
oCResizeArray< ExclElem >
oCResizeArray< float >
oCResizeArray< FloatVector >
oCResizeArray< Force >
oCResizeArray< FullAtom >
oCResizeArray< GBReal >
oCResizeArray< GenericMol * >
oCResizeArray< GlobalMaster * >
oCResizeArray< GroGaussPair >
oCResizeArray< GroLJPair >
oCResizeArray< GromacsPairElem >
oCResizeArray< ImproperElem >
oCResizeArray< InputAtom >
oCResizeArray< int >
oCResizeArray< int32 * >
oCResizeArray< intpair >
oCResizeArray< Lattice >
oCResizeArray< LSSDataMap >
oCResizeArray< LSSRefMap >
oCResizeArray< MigrationElem >
oCResizeArray< NodeID >
oCResizeArray< PatchID >
oCResizeArray< plint >
oCResizeArray< PmeGridMsg * >
oCResizeArray< PmeParticle >
oCResizeArray< Position >
oCResizeArray< Real >
oCResizeArray< ResizeArray >
oCResizeArray< SortedArray< int > >
oCResizeArray< TholeElem >
oCResizeArray< Type * >
oCResizeArray< unsigned char >
oCResizeArray< Vector >
oCResizeArray< void * >
oCResizeArrayIter< Type >
oCResizeArrayIter< PatchElem >
oCResizeArrayPrimIter< T >
oCResizeArrayRaw< Type >
oCResizeArrayRaw< Elem >
oCResults
oCScriptTcl
oCseg_resid
oCSequencer
oCOutputAtomRecord::shortVals
oCSimParameters
oCsortop_base
oCsortop_bit_reversed
oCStreamMessage
oCstring
oCStringList
oCSubmitReduction
oCtable_pair_params
oCLJTable::TableEntry
oCTaggedMsg
oCTensor
oCthole
oCTholeElem
oCTileExcl
oCTileList
oCTileListStat
oCTileListVirialEnergy
oCTopoManagerWrapper
oCTransform
oCTransposeBatch< T >
oCTransposeBatch< float2 >
oCTuplePatchElem
oCTupleSignature
oCUniqueSet< Elem >
oCUniqueSet< BOID >
oCUniqueSet< BroadcastClientElem >
oCUniqueSet< ClusterCoorElem >
oCUniqueSet< ClusterElem >
oCUniqueSet< Exclusion >
oCUniqueSet< ProxyElem >
oCUniqueSet< T >
oCUniqueSet< TaggedMsg >
oCUniqueSet< TuplePatchElem >
oCUniqueSetIter< Type >
oCUniqueSetRaw< Elem >
oCUniqueSetRaw< BOID >
oCUniqueSetRaw< BroadcastClientElem >
oCUniqueSetRaw< ClusterCoorElem >
oCUniqueSetRaw< ClusterElem >
oCUniqueSetRaw< Exclusion >
oCUniqueSetRaw< ProxyElem >
oCUniqueSetRaw< T >
oCUniqueSetRaw< TaggedMsg >
oCUniqueSetRaw< TuplePatchElem >
oCvdw_pair_params
oCvdw_params
oCvdw_val
oCVDWTable
oCvect
oCVector
oCVirialEnergy
oCvmdforce
oCwkf_timer
oCwkfmsgtimer
oCWorkIndex
\CT